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3.3Å Cryo-EM Structure of a Nonenveloped Virus Reveals a Priming Mechanism for Cell Entry

Xing Zhang,1 Lei Jin,1 Qin Fang,2 Wong H. Hui,3 and Z. Hong Zhou1,3 *
1 Department of Microbiology, Immunology & Molecular Genetics, University of California, Los Angeles, Los Angeles, CA 90095-7364, USA
2 State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei 430071, China
3 California NanoSystems Institute, University of California, Los Angeles, Los Angeles, CA 90095-7364, USA
* Correspondence: hong.zhou@ucla.edu

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Abstract

To achieve cell entry, many nonenveloped viruses must transform from a dormant to a primed state. In contrast to the membrane fusion mechanism of enveloped viruses (e.g., influenza virus), this membrane penetration mechanism is poorly understood. Here, using single-particle cryo-electron microscopy, we report a 3.3Å structure of the primed, infectious subvirion particle of aquareovirus. The density map reveals side-chain densities of all types of amino acids (except glycine), enabling construction of a full-atom model of the viral particle. Our structure and biochemical results show that priming involves autocleavage of the membrane penetration protein and suggest that Lys84 and Glu76 may facilitate this autocleavage in a nucleophilic attack. We observe a myristoyl group, covalently linked to the N terminus of the penetration protein and embedded in a hydrophobic pocket. These results suggest a well-orchestrated process of nonenveloped virus entry involving autocleavage of the penetration protein prior to exposure of its membrane-insertion finger. Cell, Volume 141, Issue 3, 472-482, 30 April 2010.

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"The ability to understand the structure of viruses at an atomic level will open avenues for manipulating them for use in drug delivery and propel numerous innovations in treatments of diseases. UCLA is fortunate to have such specialized instrumentation, and the expertise of Professor Zhou and his team to take advantage of these marvelous microscopes."
Dr. Leonard H. Rome, senior associate dean for research of UCLA's David Geffen School of Medicine and associate director of the California NanoSystems Institute.
"Dr. Zhou's work shows sensational structural results using single particle cryo-electron microscopy to resolve detailed protein structure in a large virus. This was thought to be impossible by many experts not long ago."
Dr. Wah Chiu, professor of biochemistry and molecular biology at Houston-based Baylor College of Medicine.
"This is a tremendous scientific accomplishment, and we are excited for Dr. Hong Zhou and his team at the CNSI at UCLA. It demonstrates that the FEI Vitrobot™ and Titan Krios™ TEM can be used as a workflow solution to uniquely identify atomic structures within a cell in its native hydrated state and to better understand their function."
Dr. Dominique Hubert, FEI's vice president and general manager for the Life Sciences Division.
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TILL Photonics, maker of flexible and efficient high-resolution digital light microscopes and high-speed imaging systems for live cell fluorescence microscopy is now a part of FEI.

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Graphical Abstract

UCLA Cell Graphic

 Priming mechanism for cell entry

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California NanoSystems Institute (CNSI)

Seeing molecules, materials, and molecular machines at atomic resolution and in three dimensions is critical to nanoscience. In order to facilitate this, the Electron Imaging Center for Nanomachines (EICN) was established at the California NanoSystems Institute (CNSI) through a major instrumentation grant from NIH and support from UCLA. EICN provides advanced electron imaging tools for a broad range of research, covering a scale range from tens of micrometers to angstroms, and delivering valuable structural information for cell biology, microbiology, biomolecular, molecular, and materials sciences.

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Titan Krios™ TEM

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The Titan Krios is a high resolution, automated 3D imaging solution that is specifically designed to image biological structures down to the molecular, and now, atomic level in structural biology applications. Its integrated cryogenic sample handling robotics offer improved automation over existing cryogenic TEMs, and the solution permits a full range of high resolution and 3D techniques including: cryo-electron microscopy; single particle analysis; and dual-axis tomography of frozen, hydrated samples, such as viruses and molecular machines.

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The Vitrobot enables plunge-freezing of aqueous (colloidal) suspensions, meets the demands of modern science. Its touch-screen user interface is robust and easy to use and its robotics guarantee high-quality, reproducible sample freezing and a high sample throughput.

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